Software

bama
R Package
R package for High Dimensional Bayesian Mediation Analysis
Alexander Rix, Mike Kleinsasser, Yanyi Song
CompMix
R Package
R package for Environmental Mixtures Analysis
Wei Hao
CIMPLE
R Package
R package for Analysis of Longitudinal Electronic Health Record (EHR) Data with Possibly Informative Observational Time.
Jiacong Du, Howard Baik
EHRmuse
R Package
Multi-Cohort Selection Bias Correction using IPW and AIPW Methods.
Ritoban Kundu, Michael Kleinsasser
hdmed
R Package
R Package for Methods for Mediation Analysis with High-Dimensional Mediators
Dylan Clark-Boucher, Michael Kleinsasser
LGEWIS
R Package
R package for Tests for Genetic Association/Gene-Environment Interaction in Longitudinal Studies.
Zihuai He, Seunggeun Lee, Bhramar Mukherjee, Min Zhang
lodi
R Package
R package for imputing observed values below the limit of detection in single-pollutant models via censored likelihood multiple imputation.
Jonathan Boss, Alexander Rix
medScan
R Package
R Package for Large Scale Single Mediator Hypothesis Testing
Jiacong Du, Michael Kleinsasser
miselect
R Package
R package for performing variable selection for multiply imputed data.
Michael Kleinsasser, Alexander Rix, Jiacong Du
PRSweb
Shiny Web Application
Interactive PheWAS results from analyses conducted using Michigan Genomics Initiative and UK Biobank data.
Snehal Patil
SAMBA
R Package
R package for Selection and Misclassification Bias Adjustment for Logistic Regression Models.
Alexander Rix, Lauren Beesley
snif
R Package
R package for performing Selection of Nonlinear Interactions by a Forward Stepwise Algorithm.
Alexander Rix
subgxe
R Package
R package for performing p-value assisted subset testing for association.
Youfei Yu, Alexander Rix
SynDi
R Package
R Package for integrating external model information into the current regression modeling
Michael Kleinsasser
synthEHRella
Python Package
Python package for synthetic Electronic Health Records (EHR) data generation benchmarking.
Xingran Chen
svycdiff
R Package
R Package for Controlled Difference Estimation for Complex Surveys
Stephen Salerno, Emily K Roberts, Tyler H McCormick, Bhramar Mukherjee, Xu Shi
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